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NIH Research Festival

September 14 – 16, 2016

NLM-Scrubber Project

Thursday, September 15, 2016 – Poster Session II
12:00 – 1:30 p.m.

FAES Terrace

NLM

RSCHSUPP-16

Authors

  • MM Kayaalp
  • M Chen
  • PJ Sagan
  • AC Browne
  • CJ McDonald

Abstract

Electronic health information has the potential to transform the way we provide clinical care and conduct clinical research. Ensuring patient privacy has been the most important barrier to the realization of this potential. Health Insurance Portability and Accountability Act (HIPAA) requires that clinical documents be stripped of personally identifying information prior to their secondary use for clinical research; however, manual clinical text de-identification is an arduous task. Although no automatic de-identifier is perfect, they can quickly produce de-identified text, which can then be easily reviewed and verified by the data providers for their de-identification accuracy. NLM-Scrubber is our approach to clinical text de-identification for protecting patient privacy and providing clinical scientists the data they need. In the NLM-Scrubber project, we develop (a) benchmarks for clinical report de-identification, (b) measurement tools to evaluate de-identification performance based on these benchmarks, (c) algorithmic methods to distinguish personal identifiers from clinical information, and (d) a software application called NLM-Scrubber that de-identifies clinical narrative reports. NLM-Scrubber is a freely available automatic clinical text de-identification tool with full support by its developers. Although we continuously add sophisticated functionalities to NLM-Scrubber, we strive to keep the user interface as simple as possible so that novice users can operate it easily.The user needs to fill out a short form stating mainly where the text files are located in the computer. Currently, NLM-Scrubber can accept only ASCII text reports formatted with proper capitalization. NLM-Scrubber is available for both Windows and Linux platforms. It can be downloaded from https://scrubber.nlm.nih.gov.

Scientific Focus Area: Research Support Services

This page was last updated on Friday, March 26, 2021

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2016 program

Download the 2016 Research Festival Schedule Overview (6 pages)

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Current Research Festival

  • 2025
  • 2024
    • General Schedule of Events
    • 2024 NIH Distinguished Scholars Program
    • Poster Sessions
    • Concurrent Workshops
    • NIH Resource Information Fair
    • National Academy of Science Mini-Symposium
    • Special Wednesday Events
    • Vendor Exhibit Information
    • Green Labs Fair
    • Research Festival Committee
  • 2023
    • General Schedule of Events
    • NIH Early–Career Investigator Lectures
    • Poster Sessions
    • Concurrent Workshops
    • NIH Resource Information Fair
    • Vendor Exhibit Information
    • Research Festival Committee
  • 2021
  • 2019
    • General Schedule of Events
    • Plenary Sessions
    • Poster Session
    • Data Blitz
    • FARE Award Ceremony
    • Special Exhibits on Resources for Intramural Research
    • Technical Sales Association (TSA) Research Festival Exhibit Tent Show
    • Research Festival Committee
  • 2018
    • General Schedule of Events
    • Plenary Sessions
    • Concurrent Symposia Sessions
    • Poster Sessions
    • FARE Award Ceremony
    • Special Exhibits on Resources for Intramural Research
    • Technical Sales Association (TSA) Research Festival Exhibit Tent Show
    • Research Festival Committees
  • 2017
    • General Schedule of Events
    • Plenary Sessions
    • Concurrent Symposia Sessions
    • Poster Sessions
    • FARE Award Ceremony
    • Future Research Leaders
    • Special Exhibits on Resources for Intramural Research
    • Technical Sales Association (TSA) Research Festival Exhibit Tent Show
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  • 2016
    • General Schedule of Events
    • Plenary Sessions
    • Concurrent Symposia Sessions
    • Poster Sessions
    • Browse by Presenter Name
    • Browse by Presenter IC
    • FARE Award Ceremony
    • Future Research Leaders
    • Special Exhibits on Resources for Intramural Research
    • Technical Sales Association (TSA) Research Festival Exhibit Tent Show
    • Tours of the National Library of Medicine and Clinical Center
    • Research Festival Committees
  • 2015
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    • Plenary Sessions
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